diff --git a/Code Approach 1 and 2 (2.1 - 2.2)/metrics.py b/Code Approach 1 and 2 (2.1 - 2.2)/metrics.py index ce704c093331537922b166363e4efdc39f6082b0..dddb15ca70ea806b654346779492f69609d99cd9 100644 --- a/Code Approach 1 and 2 (2.1 - 2.2)/metrics.py +++ b/Code Approach 1 and 2 (2.1 - 2.2)/metrics.py @@ -4,9 +4,6 @@ import Levenshtein import csv import ast import numpy as np -from descarteProteinas import remplazar_ID_for_sequence as rp -from descarteProteinas import substitute_or_remove_prot_id -from generate_the_excel import substitute_or_remove_prot_id def similitudProteinas(sequences): output = [] diff --git a/requirements.txt b/requirements.txt new file mode 100644 index 0000000000000000000000000000000000000000..69fd01331d999cbb5124be611f20b1ae5aa4673c --- /dev/null +++ b/requirements.txt @@ -0,0 +1,17 @@ +numpy +pandas +Levenshtein +minineedle +re +biopython +minineedle +swalign +pybind11 +multiprocessing +blosum +scipy +scikit-learn +mysql-connector-python +matplotlib +seaborn +