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COMPARA
covid_analysis
Commits
9a51e5c3
Commit
9a51e5c3
authored
May 23, 2024
by
Joaquin Torres
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ready to implement the PR curves
parent
9fa990e0
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1
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39 deletions
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-39
model_selection/cv_metric_gen.py
model_selection/cv_metric_gen.py
+38
-39
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model_selection/cv_metric_gen.py
View file @
9a51e5c3
...
...
@@ -177,7 +177,6 @@ if __name__ == "__main__":
scores_sheets
=
{}
# To store score dfs as sheets in the same excel file
for
i
,
group
in
enumerate
([
'pre'
]):
# 'post'
for
j
,
method
in
enumerate
([
''
]):
# '', 'over_', 'under_'
# print(f"{group}-{method_names[j]}")
# Get train dataset based on group and method
X_train
=
data_dic
[
'X_train_'
+
method
+
group
]
y_train
=
data_dic
[
'y_train_'
+
method
+
group
]
...
...
@@ -191,18 +190,17 @@ if __name__ == "__main__":
axes
=
[
axes
]
# Metric generation for each model
for
model_idx
,
(
model_name
,
model
)
in
enumerate
(
models
.
items
()):
if
model_name
==
'DT'
:
print
(
f
"{group}-{method_names[j]}-{model_name}"
)
# Retrieve cv scores for our metrics of interest
scores
=
cross_validate
(
model
,
X_train
,
y_train
,
scoring
=
scorings
,
cv
=
cv
,
return_train_score
=
True
,
n_jobs
=
10
)
# Save results of each fold
for
metric_name
in
scorings
.
keys
():
scores_df
.
loc
[
model_name
+
f
'_{metric_name}'
]
=
list
(
np
.
around
(
np
.
array
(
scores
[
f
"test_{metric_name}"
]),
4
))
# Generate ROC curves
# ---------- Generate ROC curves ----------
mean_fpr
=
np
.
linspace
(
0
,
1
,
100
)
tprs
,
aucs
=
[],
[]
cmap
=
plt
.
get_cmap
(
'tab10'
)
# Colormap for stronger colors
# Loop through each fold in the cross-validation
cmap
=
plt
.
get_cmap
(
'tab10'
)
# Colormap
# Loop through each fold in the cross-validation (redoing cv for simplicity)
for
fold_idx
,
(
train
,
test
)
in
enumerate
(
cv
.
split
(
X_train
,
y_train
)):
# Fit the model on the training data
model
.
fit
(
X_train
[
train
],
y_train
[
train
])
...
...
@@ -229,6 +227,7 @@ if __name__ == "__main__":
axes
[
model_idx
]
.
set
(
xlim
=
[
-
0.05
,
1.05
],
ylim
=
[
-
0.05
,
1.05
],
title
=
f
"ROC Curve - {model_name} ({group}-{method_names[j]})"
)
axes
[
model_idx
]
.
legend
(
loc
=
"lower right"
)
# ---------- END ROC curves Generation ----------
# Store the DataFrame in the dictionary with a unique key for each sheet
sheet_name
=
f
"{group}_{method_names[j]}"
scores_sheets
[
sheet_name
]
=
scores_df
...
...
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