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COMPARA
covid_analysis
Commits
b497f37d
Commit
b497f37d
authored
May 22, 2024
by
Joaquin Torres
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Metrics generated as expected for DT, generate curves for each cv split
parent
44116618
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2 changed files
with
14 additions
and
15 deletions
+14
-15
model_selection/cv_metric_gen.py
model_selection/cv_metric_gen.py
+14
-15
model_selection/output_cv_metrics.xlsx
model_selection/output_cv_metrics.xlsx
+0
-0
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model_selection/cv_metric_gen.py
View file @
b497f37d
...
@@ -153,14 +153,14 @@ if __name__ == "__main__":
...
@@ -153,14 +153,14 @@ if __name__ == "__main__":
'F1'
:
make_scorer
(
f1_score
),
'F1'
:
make_scorer
(
f1_score
),
'PREC'
:
make_scorer
(
precision_score
),
'PREC'
:
make_scorer
(
precision_score
),
'REC'
:
make_scorer
(
recall_score
),
'REC'
:
make_scorer
(
recall_score
),
#
'ACC': make_scorer(accuracy_score),
'ACC'
:
make_scorer
(
accuracy_score
),
#
'NREC': negative_recall_scorer,
'NREC'
:
negative_recall_scorer
,
#
'TN':TN_scorer,
'TN'
:
TN_scorer
,
#
'FN':FN_scorer,
'FN'
:
FN_scorer
,
#
'FP':FP_scorer,
'FP'
:
FP_scorer
,
#
'TP':TP_scorer,
'TP'
:
TP_scorer
,
#
'AUROC': make_scorer(roc_auc_score),
'AUROC'
:
make_scorer
(
roc_auc_score
),
#
'AUPRC': make_scorer(average_precision_score)
'AUPRC'
:
make_scorer
(
average_precision_score
)
}
}
method_names
=
{
method_names
=
{
0
:
"ORIG"
,
0
:
"ORIG"
,
...
@@ -188,7 +188,6 @@ if __name__ == "__main__":
...
@@ -188,7 +188,6 @@ if __name__ == "__main__":
scores_df
=
pd
.
DataFrame
(
columns
=
range
(
1
,
11
),
index
=
[
f
"{model_name}_{metric_name}"
for
model_name
in
models
.
keys
()
for
metric_name
in
scorings
.
keys
()])
scores_df
=
pd
.
DataFrame
(
columns
=
range
(
1
,
11
),
index
=
[
f
"{model_name}_{metric_name}"
for
model_name
in
models
.
keys
()
for
metric_name
in
scorings
.
keys
()])
# Metric generation for each model
# Metric generation for each model
for
model_name
,
model
in
models
.
items
():
for
model_name
,
model
in
models
.
items
():
if
model_name
==
'DT'
:
print
(
f
"{group}-{method_names[j]}-{model_name}"
)
print
(
f
"{group}-{method_names[j]}-{model_name}"
)
# Retrieve cv scores for our metrics of interest
# Retrieve cv scores for our metrics of interest
scores
=
cross_validate
(
model
,
X_train
,
y_train
,
scoring
=
scorings
,
cv
=
cv
,
return_train_score
=
True
,
n_jobs
=
10
)
scores
=
cross_validate
(
model
,
X_train
,
y_train
,
scoring
=
scorings
,
cv
=
cv
,
return_train_score
=
True
,
n_jobs
=
10
)
...
...
model_selection/output_cv_metrics.xlsx
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b497f37d
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