From 429d26498b938448c43a04769c490acca2207d4d Mon Sep 17 00:00:00 2001 From: Andrea Alvarez Perez Date: Thu, 3 Apr 2025 11:36:06 +0000 Subject: [PATCH] Add README.md --- data/disnet/README.md | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 data/disnet/README.md diff --git a/data/disnet/README.md b/data/disnet/README.md new file mode 100644 index 0000000..f372adb --- /dev/null +++ b/data/disnet/README.md @@ -0,0 +1,18 @@ +# DISNET DATA - BIOLOGICAL ENTITIES AND ASSOCIATIONS + +This directory contains the data referring to the nodes and links used in this research. + +## Nodes + +| Data | Description | Identifier | Total | Source | ACCESSED DATE | +|-------------------------|------------------------------------------------------------------|--------------------------------------------------------------------------|--------|--------------------------------------------------------------------------------------------|----------------------| +| [Genes (gen.tsv)](https://medal.ctb.upm.es/internal/gitlab/disnet/network-medicine/network-medicine-and-single-cell-for-alzheimer/new/master/data/disnet/gen.tsv) | Data relating to genes, including their symbol and identifier | National Center of Biotechnology Information (NCBI) Identifiers | 26,181 | [NCBI](https://www.ncbi.nlm.nih.gov/) | May 2024 | + + +## Links + +| Data | Description | Identifier | Total | Source | ACCESSED DATE | +|-----------------------------------|------------------------------------------------------------------------------------|----------------------------------------------------------------|--------|-----------------------------------------------------------------------------------|----------------------------| +| [Disease – Gene (dis_gen.tsv)](https://medal.ctb.upm.es/internal/gitlab/disnet/network-medicine/network-medicine-and-single-cell-for-alzheimer/new/master/data/disnet/dis_gen.tsv) | Associations between diseases and genes whose mutation triggers the disease. Due to its size, the file is stored in | UMLS CUI – NCBI Identifier | 1,045,745 | [DisGeNET](https://www.disgenet.org/) | May 2024 | +| Gene – Protein (gen_pro.tsv) | Associations between genes and proteins produced from the gene | NCBI Identifier – Accession Number in UniProt | 15,770 | [DisGeNET](https://www.disgenet.org/) | May 2020 | +| Protein – Protein (pro_pro.tsv) | Associations between proteins that physically interact with each other | Accession number in UniProt – Accession number in UniProt | 439,863| [DisGeNET](https://www.disgenet.org/) | May 2020 | -- 2.24.1