From 5c2daaede6fbbceaefcae05fcbeb29ea83ff79e0 Mon Sep 17 00:00:00 2001 From: aalvarezp Date: Tue, 13 May 2025 14:29:57 +0200 Subject: [PATCH] File update --- code/scrna_ppi_analysis.ipynb | 22 +++++++++++++++++++--- 1 file changed, 19 insertions(+), 3 deletions(-) diff --git a/code/scrna_ppi_analysis.ipynb b/code/scrna_ppi_analysis.ipynb index c4d7bd7..182150c 100644 --- a/code/scrna_ppi_analysis.ipynb +++ b/code/scrna_ppi_analysis.ipynb @@ -2551,8 +2551,6 @@ }, { "cell_type": "code", - "execution_count": 386, - "outputs": [], "source": [ "cell_data = pd.read_csv('../data/results/network_analysis.csv')\n", "module_data = pd.read_csv('../data/results/G_ppi_analysis.csv')\n", @@ -2563,9 +2561,27 @@ "collapsed": false, "pycharm": { "name": "#%%\n" + }, + "ExecuteTime": { + "end_time": "2025-05-13T12:21:35.841008Z", + "start_time": "2025-05-13T12:21:33.778546Z" } }, - "id": "3237a956b8eb2b7c" + "id": "3237a956b8eb2b7c", + "outputs": [ + { + "ename": "NameError", + "evalue": "name 'pd' is not defined", + "output_type": "error", + "traceback": [ + "\u001B[1;31m---------------------------------------------------------------------------\u001B[0m", + "\u001B[1;31mNameError\u001B[0m Traceback (most recent call last)", + "Cell \u001B[1;32mIn[1], line 1\u001B[0m\n\u001B[1;32m----> 1\u001B[0m cell_data \u001B[38;5;241m=\u001B[39m pd\u001B[38;5;241m.\u001B[39mread_csv(\u001B[38;5;124m'\u001B[39m\u001B[38;5;124m../data/results/network_analysis.csv\u001B[39m\u001B[38;5;124m'\u001B[39m)\n\u001B[0;32m 2\u001B[0m module_data \u001B[38;5;241m=\u001B[39m pd\u001B[38;5;241m.\u001B[39mread_csv(\u001B[38;5;124m'\u001B[39m\u001B[38;5;124m../data/results/G_ppi_analysis.csv\u001B[39m\u001B[38;5;124m'\u001B[39m)\n\u001B[0;32m 4\u001B[0m module_data_lcc \u001B[38;5;241m=\u001B[39m module_data[module_data[\u001B[38;5;124m'\u001B[39m\u001B[38;5;124mis_in_LCC\u001B[39m\u001B[38;5;124m'\u001B[39m] \u001B[38;5;241m==\u001B[39m \u001B[38;5;28;01mTrue\u001B[39;00m]\n", + "\u001B[1;31mNameError\u001B[0m: name 'pd' is not defined" + ] + } + ], + "execution_count": 1 }, { "cell_type": "code", -- 2.24.1