From 25a58253381f56b6acae0289ff06f49bd1ab2f86 Mon Sep 17 00:00:00 2001 From: Maria Marin Date: Mon, 1 Apr 2024 09:20:31 +0000 Subject: [PATCH] Update total diseases analysis.ipynb --- analysis/total diseases analysis.ipynb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/analysis/total diseases analysis.ipynb b/analysis/total diseases analysis.ipynb index 723fb4e..f9f247e 100644 --- a/analysis/total diseases analysis.ipynb +++ b/analysis/total diseases analysis.ipynb @@ -149,9 +149,9 @@ "results = {\n", " \"ID\": dis_total,\n", " \"Seed genes\": [len(dis_gen_dict[dis]) for dis in dis_total],\n", - " \"Genes in PPI\": [len(df_pro_dis_total_filt[df_pro_dis_total_filt[\"dis\"] == dis][\"pro_ppi\"].iloc[0]) for dis in dis_total],\n", + " \"Genes in PPI\": [len(dis_total[dis_total[\"dis\"] == dis][\"pro_ppi\"].iloc[0]) for dis in dis_total],\n", " \"Genes in LCC\": [len(dis_lcc[dis]) for dis in dis_total],\n", - " \"Relative LCC\": [len(dis_lcc[dis]) / len(df_pro_dis_total_filt[df_pro_dis_total_filt[\"dis\"] == dis][\"pro_ppi\"].iloc[0]) for dis in dis_total],\n", + " \"Relative LCC\": [len(dis_lcc[dis]) / len(dis_total[dis_total[\"dis\"] == dis][\"pro_ppi\"].iloc[0]) for dis in dis_total],\n", " \"Mean random LCC (ndp)\": [dis_lcc_ndp[dis][0] for dis in dis_total],\n", " \"Std random LCC (ndp)\": [dis_lcc_ndp[dis][1] for dis in dis_total],\n", " \"Z-score (ndp)\": [dis_lcc_ndp[dis][2] for dis in dis_total],\n", -- 2.24.1