Skip to content
Projects
Groups
Snippets
Help
Loading...
Help
Support
Submit feedback
Sign in
Toggle navigation
P
Paperdisnet
Project overview
Project overview
Details
Activity
Releases
Cycle Analytics
Repository
Repository
Files
Commits
Branches
Tags
Contributors
Graph
Compare
Charts
Issues
0
Issues
0
List
Boards
Labels
Milestones
Merge Requests
0
Merge Requests
0
CI / CD
CI / CD
Pipelines
Jobs
Schedules
Charts
Wiki
Wiki
Snippets
Snippets
Members
Members
Collapse sidebar
Close sidebar
Activity
Graph
Charts
Create a new issue
Jobs
Commits
Issue Boards
Open sidebar
Disnet
Paperdisnet
Commits
0737ced1
Commit
0737ced1
authored
Mar 07, 2019
by
Gerardo Lagunes García
Browse files
Options
Browse Files
Download
Email Patches
Plain Diff
march 2019 update add file
parent
35f2283b
Changes
8
Expand all
Show whitespace changes
Inline
Side-by-side
Showing
8 changed files
with
19944 additions
and
0 deletions
+19944
-0
.DS_Store
.DS_Store
+0
-0
DISNET_summing_source_counts/DISNET_diseases.txt
DISNET_summing_source_counts/DISNET_diseases.txt
+6546
-0
DISNET_summing_source_counts/UMLS_terms.txt
DISNET_summing_source_counts/UMLS_terms.txt
+2213
-0
DISNET_summing_source_counts/semantic_types.txt
DISNET_summing_source_counts/semantic_types.txt
+20
-0
knowledge_sources/mayoclinic_knowledge.csv
knowledge_sources/mayoclinic_knowledge.csv
+26
-0
knowledge_sources/pubmed_knowledge.csv
knowledge_sources/pubmed_knowledge.csv
+23
-0
knowledge_sources/wikipedia_knowledge.csv
knowledge_sources/wikipedia_knowledge.csv
+41
-0
wikipedia_diseases_articles_by_dbpedia.txt
wikipedia_diseases_articles_by_dbpedia.txt
+11075
-0
No files found.
.DS_Store
0 → 100644
View file @
0737ced1
File added
DISNET_summing_source_counts/DISNET_diseases.txt
0 → 100644
View file @
0737ced1
This diff is collapsed.
Click to expand it.
DISNET_summing_source_counts/UMLS_terms.txt
0 → 100644
View file @
0737ced1
This diff is collapsed.
Click to expand it.
DISNET_summing_source_counts/semantic_types.txt
0 → 100644
View file @
0737ced1
SemanticTypes
acab
anab
cgab
clna
comd
diap
dsyn
emod
fndg
inpr
lbpr
lbtr
mbrt
menp
mnob
mobd
neop
patf
sosy
\ No newline at end of file
knowledge_sources/mayoclinic_knowledge.csv
0 → 100644
View file @
0737ced1
source;snapshot;MYCDis;MYCWRTDis;MYCWVTMDis;MYCRawDF;MYCVRawDF;MYCTxt;MYCST;;;
mayoclinic;15/08/2018;1,176;1,091;1,091;4,196;1,066;10,816;15;;;
mayoclinic;01/09/2018;1,176;1,091;1,091;4,187;1,064;10,805;15;;;
mayoclinic;15/09/2018;1,176;1,092;1,092;4,185;1,064;10,811;15;;;
mayoclinic;01/10/2018;1,176;1,094;1,094;4,190;1,066;10,830;15;;;
mayoclinic;15/10/2018;1,176;1,094;1,094;4,190;1,068;10,819;15;;;
mayoclinic;01/11/2018;1,176;1,095;1,095;4,186;1,067;10,819;15;;;
mayoclinic;15/11/2018;1,176;1,097;1,097;4,185;1,067;10,810;15;;;
mayoclinic;01/12/2018;1,177;1,099;1,099;4,186;1,068;10,814;15;;;
mayoclinic;15/12/2018;1,179;1,114;1,114;4,219;1,069;10,856;15;;;
mayoclinic;01/01/2019;1,180;1,124;1,124;4,226;1,072;10,867;15;;;
mayoclinic;15/01/2019;1,180;1,125;1,125;4,227;1,072;10,870;15;;;
mayoclinic;01/02/2019;1,180;1,126;1,126;4,224;1,071;10,880;15;;;
mayoclinic;15/02/2019;1,180;1,127;1,127;4,227;1,072;10,893;15;;;
;;;;;;;;;;;
Medical Term (MT);;;;;;;;;;;
Validated Medical Term (applaying TVP validation) (VMT) ;;;;;;;;;;;
MayoClinic (MYC);;;;;;;;;;;
;;;;;;;;;;;
Number of articles retrieved from MYC official Web page as diseases (MYCDis);;;;;;;;;;;
Number of articles retrieved from MYC as diseases with relevant texts (MYCWRTDis);;;;;;;;;;;
Number of articles retrieved from MYC as diseases with VMT (MYCWVTMDis);;;;;;;;;;;
Number of MT found by MetaMap (not applying TVP validation but removing duplicates) (MYCRawDF);;;;;;;;;;;
Number of MT found by MetaMap (applying TVP validation but removing duplicates) (MYCVRawDF);;;;;;;;;;;
Number of texts (MYCTxt);;;;;;;;;;;
Number of semantic types found (again: before applying TVP) (MYCST);;;;;;;;;;;
\ No newline at end of file
knowledge_sources/pubmed_knowledge.csv
0 → 100644
View file @
0737ced1
•ÈÀsource;snapshot;MeSHDis;MeSHWVTMDis;PMARDArt;PMRDArt;PMRawDF;PMVRawDF;PMST;PMExCd;PMExtSrc
pubmed;03/04/2018;2,355;2,212;199,013;197,066;22,521;2,043;18;15,676;5
;;;;;;;;;;
;;;;;;;;;;
;;;;;;;;;;
;;;;;;;;;;
;;;;;;;;;;
;;;;;;;;;;
;;;;;;;;;;
;;;;;;;;;;
;;;;;;;;;;
Medical Term (MT);;;;;;;;;;
Validated Medical Term (applaying TVP validation) (VMT) ;;;;;;;;;;
;;;;;;;;;;
Number of terms retrieved by MeSH as human diseases (MeSHDis);;;;;;;;;;
Number of terms retrieved by MeSH as human diseases with VMT (MeSHWVTMDis);;;;;;;;;;
Number of PubMed articles retrieved (PMARDArt);;;;;;;;;;
Number of PubMed articles that contains VMT (PMRDArt);;;;;;;;;;
Number of MTs found by MetaMap (not applying TVP validation but removing duplicates) (PMRawDF);;;;;;;;;;
Number of MTs found by MetaMap (applying TVP validation but removing duplicates) (PMVRawDF);;;;;;;;;;
Number of semantic types found (again: before applying TVP) (PMST);;;;;;;;;;
Number of external codes found in PubMed (PMExCd);;;;;;;;;;
Number of external sources found in PubMed (PMExtSrc);;;;;;;;;;
\ No newline at end of file
knowledge_sources/wikipedia_knowledge.csv
0 → 100644
View file @
0737ced1
source;snapshot;DBpDis;WVRDArt;WRDArt;WRawDF;WVRawDF;WTxt;WST;WExCd;WExtSrc;WLink
wikipedia;01/02/2018;8,161;5,536;3,625;13,332;1,932;30,932;17;19,203;61;148,640
wikipedia;15/02/2018;8,161;5,537;3,631;13,356;1,934;31,009;17;19,161;60;149,073
wikipedia;01/03/2018;8,161;5,536;3,636;13,393;1,937;31,199;17;19,116;60;149,799
wikipedia;15/03/2018;8,161;5,536;3,644;13,431;1,942;31,463;17;19,102;60;151,065
wikipedia;01/04/2018;9,857;5,840;3,841;13,598;1,949;32,956;17;19,302;62;157,585
wikipedia;15/04/2018;9,858;5,841;3,846;13,608;1,950;33,016;17;19,289;62;158,107
wikipedia;01/05/2018;9,858;5,843;3,860;13,630;1,954;33,153;17;19,272;62;158,910
wikipedia;15/05/2018;9,858;5,843;3,871;13,692;1,955;33,246;17;19,270;62;159,262
wikipedia;01/06/2018;9,858;5,854;4,047;13,853;1,964;34,376;17;19,246;58;163,710
wikipedia;15/06/2018;9,858;5,856;4,061;14,169;1,968;34,584;18;19,224;58;164,709
wikipedia;01/07/2018;9,858;5,855;4,062;13,980;1,970;34,953;17;19,209;59;165,732
wikipedia;15/07/2018;9,858;5,858;4,069;13,991;1,970;35,044;17;19,207;58;166,127
wikipedia;01/08/2018;9,858;5,859;4,083;14,013;1,972;35,153;17;19,202;58;166,814
wikipedia;15/08/2018;9,858;5,861;4,087;14,019;1,972;35,247;17;19,201;58;167,300
wikipedia;01/09/2018;9,858;5,862;4,090;14,022;1,973;35,296;17;19,333;58;167,584
wikipedia;15/09/2018;9,858;5,862;4,091;14,022;1,973;35,293;17;19,339;58;167,688
wikipedia;01/10/2018;9,858;5,861;4,093;14,032;1,973;35,343;17;19,351;58;167,928
wikipedia;15/10/2018;9,858;5,861;4,097;14,050;1,973;35,449;17;19,360;58;168,497
wikipedia;01/11/2018;9,858;5,859;4,101;14,064;1,974;35,522;17;19,360;58;168,972
wikipedia;15/11/2018;9,858;5,858;4,106;14,089;1,974;35,657;17;19,366;58;169,745
wikipedia;01/12/2018;9,858;5,855;4,111;14,140;1,976;35,778;17;19,355;59;170,344
wikipedia;15/12/2018;9,858;5,860;4,119;14,159;1,978;35,949;17;19,365;59;171,203
wikipedia;01/01/2019;9,858;5,860;4,128;14,182;1,981;36,111;17;19,365;59;172,082
wikipedia;15/01/2019;9,858;5,872;4,139;14,185;1,981;36,192;17;19,366;59;172,456
wikipedia;01/02/2019;11,084;6,714;4,692;14,722;2,009;40,913;17;20,237;59;193,860
wikipedia;15/02/2019;11,084;6,714;4,692;14,722;2,009;40,913;17;20,237;59;193,860
;;;;;;;;;;;
Medical Term (MT);;;;;;;;;;;
Validated Medical Term (applaying TVP validation) (VMT) ;;;;;;;;;;;
;;;;;;;;;;;
Number of articles retrieved by DBpedia as diseases (DBpDis);;;;;;;;;;;
Number of valid Wikipedia articles to insert in the database (WVRDArt);;;;;;;;;;;
Number of Wikipedia articles that contains VMT (WRDArt);;;;;;;;;;;
Number of MT found by MetaMap (not applying TVP validation but removing duplicates) (WRawDF);;;;;;;;;;;
Number of MT found by MetaMap (applying TVP validation but removing duplicates) (WVRawDF);;;;;;;;;;;
Number of texts (WTxt);;;;;;;;;;;
Number of semantic types found (again: before applying TVP) (WST);;;;;;;;;;;
Number of external codes found in Wikipedia (WExCd);;;;;;;;;;;
Number of external sources found in Wikipedia (WExtSrc);;;;;;;;;;;
Number of links found in the texts (WLink);;;;;;;;;;;
\ No newline at end of file
wikipedia_diseases_articles_by_dbpedia.txt
0 → 100644
View file @
0737ced1
This diff is collapsed.
Click to expand it.
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment