diff --git a/SEM-DISNET Documentation/index-en.html b/SEM-DISNET Documentation/index-en.html index c81fcfc3ce0d64d7c7cbda548c0660b9e0ba51db..0b970d641a8e64d7a6e126df79beb08c5551b5c5 100644 --- a/SEM-DISNET Documentation/index-en.html +++ b/SEM-DISNET Documentation/index-en.html @@ -55,7 +55,7 @@
language en

SEM-DISNET

-

Release 2022-03-30

+

Release 2022-06-10

@@ -585,7 +585,7 @@ This ontology has the following classes and properties. as an attribute (cco:proteinSequence) reused from ChEMBL ontology. Each protein also belongs to a class (obo:Protein class) and participates (sio:'is participant in') in protein-protein interactions (ncit:PPI). Furthermore, both Protein and Gene classes are present in Organisms (ncit:Organism), - and either Organism and Protein are can act as a target (sio:'is target in', being related to Target class + and either Organism and Protein can act as a target (sio:'is target in'), being related to Target class (cco:Target).
  • Association between a Disease and a Phenotype: this association and the related class Phenotype (disnet:Phenotype) have been modelled de novo, since no existing classes were found in other @@ -597,14 +597,13 @@ This ontology has the following classes and properties.
  • The association between both central classes, Disease and Drug was reused from the CTD, the main - source from which the information stored in the DISNET database is obtained. However, this class has (owl:sameAs) - an associated class in SIO (sio:'chemical-disease association'). In addition, this association has been - modelled de novo with two subclasses emerging from it. Drug-disease pairs are classified into these subclasses + source from which the information stored in the DISNET database is obtained. In addition, this association has been + modelled de novo with three subclasses emerging from it. Drug-disease pairs are classified into these subclasses depending on the effect the drug has on the disease. A chemical that correlates with a disease or may play a role in the etiology of a disease, acting as a marker of those diseases (disnet:Drug Disease Marker) or it can be used to treat the disease, having a known or potential therapeutic effect on it (disnet:Drug Disease Therapeutic). - Additionally, the association is identified by an inferred score established by CTD-curated chemical-gene interactions - (sio:'has value'). + Additionally, the association is identified as Inferred (disnet:Drug Disease Inferred)by an inferred score e + stablished by CTD-curated chemical-gene interactions when the association cannot be identified neither as Marker or Therapeutic.

  • Drug class

    This class (cco:Drug) was reused from ChEMBL database and represents, according to the Chemical Entities of Biological Interest (ChEBI), any substance which when absorbed into a living organism may modify @@ -642,7 +641,7 @@ This ontology has the following classes and properties. is specified in the boxes above the diagram, so highlighted Object Properties are subproperties of SIO and another reused ontology.

  • Drug Drug Interaction: is an interaction in which two drugs interact in such a way to - produce a non-additive biological response (sio:DDI). The ain source (skos:exactMatch) is + produce a non-additive biological response (sio:DDI). The main source (skos:exactMatch) is DrugBank. However, TWOSIDES provides the information about the potential adverse side effects that the DDI causes in a phenotype, and it is related to Phenotype class by two de novo Object Properties (disnet:isSideEffect and disnet:hasSideEffect). Furthermore, drug participate (sio:'is participant in') drug-drug