diff --git a/SEM-DISNET Documentation/OOPSevaluation/oopsEval.html b/SEM-DISNET Documentation/OOPSevaluation/oopsEval.html index 926f7a041b684dc4f78930b278c4f00f04a6234e..87124b9aa34a5989e4beeb7f2698ae8d7e678dc2 100644 --- a/SEM-DISNET Documentation/OOPSevaluation/oopsEval.html +++ b/SEM-DISNET Documentation/OOPSevaluation/oopsEval.html @@ -62,12 +62,12 @@

-P04. Creating unconnected ontology elements4 cases detected. Minor +P04. Creating unconnected ontology elements5 cases detected. Minor

-

Ontology elements (classes, object properties and datatype properties) are created isolated, with no relation to the rest of the ontology.

This pitfall affects to the following ontology elements:

+

Ontology elements (classes, object properties and datatype properties) are created isolated, with no relation to the rest of the ontology.

This pitfall affects to the following ontology elements:

@@ -79,7 +79,7 @@ P08. Missing annotations21 cases detected.
-

This pitfall consists in creating an ontology element and failing to provide human readable annotations attached to it. Consequently, ontology elements lack annotation properties that label them (e.g. rdfs:label, lemon:LexicalEntry, skos:prefLabel or skos:altLabel) or that define them (e.g. rdfs:comment or dc:description). This pitfall is related to the guidelines provided in [5].

This pitfall affects to the following ontology elements:

+

This pitfall consists in creating an ontology element and failing to provide human readable annotations attached to it. Consequently, ontology elements lack annotation properties that label them (e.g. rdfs:label, lemon:LexicalEntry, skos:prefLabel or skos:altLabel) or that define them (e.g. rdfs:comment or dc:description). This pitfall is related to the guidelines provided in [5].

This pitfall affects to the following ontology elements:

@@ -91,7 +91,7 @@ P11. Missing domain or range in properties9 cases de
-

Object and/or datatype properties without domain or range (or none of them) are included in the ontology.

This pitfall affects to the following ontology elements:

+

Object and/or datatype properties without domain or range (or none of them) are included in the ontology.

This pitfall affects to the following ontology elements:

diff --git a/SEM-DISNET Documentation/ontology.jsonld b/SEM-DISNET Documentation/ontology.jsonld index e7ccaedddb02c02337f0afeef2aed853bc2ab144..5a3f25fba36e2d1154a54ed2cf28411c2925d927 100644 --- a/SEM-DISNET Documentation/ontology.jsonld +++ b/SEM-DISNET Documentation/ontology.jsonld @@ -14,25 +14,7 @@ "@value" : "DesignNote" } ] }, { - "@id" : "_:genid100", - "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], - "http://www.w3.org/2002/07/owl#unionOf" : [ { - "@list" : [ { - "@id" : "http://semanticscience.org/resource/SIO_000897" - }, { - "@id" : "http://semanticscience.org/resource/SIO_000983" - }, { - "@id" : "https://w3id.org/eboca/sem-disnet#DiseaseNcrna" - }, { - "@id" : "https://w3id.org/eboca/sem-disnet#DiseasePhenotype" - }, { - "@id" : "https://w3id.org/eboca/sem-disnet#DrugDisease" - }, { - "@id" : "https://w3id.org/eboca/sem-disnet#Prevalence" - } ] - } ] -}, { - "@id" : "_:genid107", + "@id" : "_:genid106", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2002/07/owl#unionOf" : [ { "@list" : [ { @@ -49,8 +31,6 @@ "@id" : "http://www.orpha.net/ORDO/Orphanet_409967" }, { "@id" : "http://www.orpha.net/ORDO/Orphanet_557492" - }, { - "@id" : "http://www.orpha.net/ORDO/Orphanet_C009" }, { "@id" : "https://w3id.org/eboca/sem-disnet#Phenotype" } ] @@ -66,7 +46,7 @@ } ] } ] }, { - "@id" : "_:genid117", + "@id" : "_:genid115", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2002/07/owl#unionOf" : [ { "@list" : [ { @@ -76,7 +56,7 @@ } ] } ] }, { - "@id" : "_:genid120", + "@id" : "_:genid118", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2002/07/owl#unionOf" : [ { "@list" : [ { @@ -86,7 +66,7 @@ } ] } ] }, { - "@id" : "_:genid123", + "@id" : "_:genid121", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2002/07/owl#unionOf" : [ { "@list" : [ { @@ -108,7 +88,7 @@ } ] } ] }, { - "@id" : "_:genid132", + "@id" : "_:genid130", "@type" : [ "http://www.w3.org/2000/01/rdf-schema#Datatype" ], "http://www.w3.org/2002/07/owl#unionOf" : [ { "@list" : [ { @@ -120,7 +100,7 @@ } ] } ] }, { - "@id" : "_:genid136", + "@id" : "_:genid134", "@type" : [ "http://www.w3.org/2002/07/owl#Axiom" ], "http://www.geneontology.org/formats/oboInOwl#hasDbXref" : [ { "@value" : "HPO:probinson" @@ -135,7 +115,7 @@ "@value" : "A phenotypic abnormality." } ] }, { - "@id" : "_:genid137", + "@id" : "_:genid135", "@type" : [ "http://www.w3.org/2002/07/owl#Axiom" ], "http://www.geneontology.org/formats/oboInOwl#hasDbXref" : [ { "@value" : "SO:ke" @@ -150,7 +130,7 @@ "@value" : "A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." } ] }, { - "@id" : "_:genid138", + "@id" : "_:genid136", "@type" : [ "http://www.w3.org/2002/07/owl#Axiom" ], "http://www.geneontology.org/formats/oboInOwl#hasDbXref" : [ { "@value" : "http://doc-openbio.readthedocs.org/projects/jannovar/en/master/var_effects.html" @@ -168,7 +148,7 @@ "@value" : "Jannovar:sequence_variant" } ] }, { - "@id" : "_:genid139", + "@id" : "_:genid137", "@type" : [ "http://www.w3.org/2002/07/owl#Axiom" ], "http://www.geneontology.org/formats/oboInOwl#hasSynonymType" : [ { "@id" : "http://purl.obolibrary.org/obo/so#VAR" @@ -183,17 +163,7 @@ "@value" : "VAAST:sequence_variant" } ] }, { - "@id" : "_:genid14", - "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], - "http://www.w3.org/2002/07/owl#unionOf" : [ { - "@list" : [ { - "@id" : "http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C7057" - }, { - "@id" : "https://w3id.org/eboca/sem-disnet#Phenotype" - } ] - } ] -}, { - "@id" : "_:genid140", + "@id" : "_:genid138", "@type" : [ "http://www.w3.org/2002/07/owl#Axiom" ], "http://www.geneontology.org/formats/oboInOwl#hasDbXref" : [ { "@value" : "http://www.openbioinformatics.org/annovar/annovar_download.html" @@ -210,6 +180,16 @@ "http://www.w3.org/2002/07/owl#annotatedTarget" : [ { "@value" : "ANNOVAR:unknown" } ] +}, { + "@id" : "_:genid14", + "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], + "http://www.w3.org/2002/07/owl#unionOf" : [ { + "@list" : [ { + "@id" : "http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C7057" + }, { + "@id" : "https://w3id.org/eboca/sem-disnet#Phenotype" + } ] + } ] }, { "@id" : "_:genid17", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], @@ -423,14 +403,12 @@ "@id" : "http://www.orpha.net/ORDO/Orphanet_409967" }, { "@id" : "http://www.orpha.net/ORDO/Orphanet_557492" - }, { - "@id" : "http://www.orpha.net/ORDO/Orphanet_C009" }, { "@id" : "https://w3id.org/eboca/sem-disnet#Phenotype" } ] } ] }, { - "@id" : "_:genid69", + "@id" : "_:genid68", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2002/07/owl#unionOf" : [ { "@list" : [ { @@ -448,7 +426,7 @@ } ] } ] }, { - "@id" : "_:genid76", + "@id" : "_:genid75", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2002/07/owl#unionOf" : [ { "@list" : [ { @@ -460,31 +438,31 @@ } ] } ] }, { - "@id" : "_:genid8", + "@id" : "_:genid79", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2002/07/owl#unionOf" : [ { "@list" : [ { - "@id" : "http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C18329" + "@id" : "http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C7057" }, { - "@id" : "http://semanticscience.org/resource/SIO_000326" + "@id" : "http://purl.obolibrary.org/obo/SO_0001060" + }, { + "@id" : "http://semanticscience.org/resource/SIO_000897" + }, { + "@id" : "http://semanticscience.org/resource/SIO_000983" } ] } ] }, { - "@id" : "_:genid80", + "@id" : "_:genid8", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2002/07/owl#unionOf" : [ { "@list" : [ { - "@id" : "http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C7057" - }, { - "@id" : "http://purl.obolibrary.org/obo/SO_0001060" - }, { - "@id" : "http://semanticscience.org/resource/SIO_000897" + "@id" : "http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C18329" }, { - "@id" : "http://semanticscience.org/resource/SIO_000983" + "@id" : "http://semanticscience.org/resource/SIO_000326" } ] } ] }, { - "@id" : "_:genid85", + "@id" : "_:genid84", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2002/07/owl#unionOf" : [ { "@list" : [ { @@ -498,7 +476,7 @@ } ] } ] }, { - "@id" : "_:genid90", + "@id" : "_:genid89", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2002/07/owl#unionOf" : [ { "@list" : [ { @@ -510,7 +488,7 @@ } ] } ] }, { - "@id" : "_:genid94", + "@id" : "_:genid93", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2002/07/owl#unionOf" : [ { "@list" : [ { @@ -520,7 +498,7 @@ } ] } ] }, { - "@id" : "_:genid97", + "@id" : "_:genid96", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2002/07/owl#unionOf" : [ { "@list" : [ { @@ -529,6 +507,24 @@ "@id" : "http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17021" } ] } ] +}, { + "@id" : "_:genid99", + "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], + "http://www.w3.org/2002/07/owl#unionOf" : [ { + "@list" : [ { + "@id" : "http://semanticscience.org/resource/SIO_000897" + }, { + "@id" : "http://semanticscience.org/resource/SIO_000983" + }, { + "@id" : "https://w3id.org/eboca/sem-disnet#DiseaseNcrna" + }, { + "@id" : "https://w3id.org/eboca/sem-disnet#DiseasePhenotype" + }, { + "@id" : "https://w3id.org/eboca/sem-disnet#DrugDisease" + }, { + "@id" : "https://w3id.org/eboca/sem-disnet#Prevalence" + } ] + } ] }, { "@id" : "http://bio2rdf.org/bio2rdf_vocabulary:identifier", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ] @@ -2737,7 +2733,7 @@ "@value" : "" } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { - "@id" : "_:genid117" + "@id" : "_:genid115" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "The ChEMBL ID for a given entity" @@ -2824,7 +2820,7 @@ "@value" : "The highest phase the molecule has reached in drug approval process (4 = approved)" } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { - "@id" : "_:genid120" + "@id" : "_:genid118" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "ChEMBL Molecule Development Phase" @@ -3349,7 +3345,7 @@ "@value" : "is referred to by" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { - "@id" : "_:genid69" + "@id" : "_:genid68" } ], "http://www.w3.org/2002/07/owl#inverseOf" : [ { "@id" : "http://semanticscience.org/resource/SIO_000628" @@ -3368,7 +3364,7 @@ "@value" : "is measurement value of is a relation between a value and the entity that it is a measurement of." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { - "@id" : "_:genid76" + "@id" : "_:genid75" } ], "http://www.w3.org/2000/01/rdf-schema#isDefinedBy" : [ { "@id" : "http://semanticscience.org/ontology/sio.owl" @@ -3378,7 +3374,7 @@ "@value" : "is measurement value of" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { - "@id" : "_:genid80" + "@id" : "_:genid79" } ], "http://www.w3.org/2000/01/rdf-schema#subPropertyOf" : [ { "@id" : "http://semanticscience.org/resource/SIO_000011" @@ -3403,7 +3399,7 @@ "@value" : "core" } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { - "@id" : "_:genid85" + "@id" : "_:genid84" } ], "http://www.w3.org/2000/01/rdf-schema#isDefinedBy" : [ { "@id" : "http://semanticscience.org/ontology/sio.owl" @@ -3413,7 +3409,7 @@ "@value" : "has measurement value" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { - "@id" : "_:genid90" + "@id" : "_:genid89" } ], "http://www.w3.org/2000/01/rdf-schema#subPropertyOf" : [ { "@id" : "http://semanticscience.org/resource/SIO_000008" @@ -3432,7 +3428,7 @@ "@value" : "has target is a relation between a process and an entity, where the entity is present at the beginning of the process and undergoes a change or transformation in the process." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { - "@id" : "_:genid94" + "@id" : "_:genid93" } ], "http://www.w3.org/2000/01/rdf-schema#isDefinedBy" : [ { "@id" : "http://semanticscience.org/ontology/sio.owl" @@ -3471,7 +3467,7 @@ "@value" : "is target in" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { - "@id" : "_:genid97" + "@id" : "_:genid96" } ], "http://www.w3.org/2004/02/skos/core#example" : [ { "@language" : "en", @@ -3501,7 +3497,7 @@ "@value" : "relations" } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { - "@id" : "_:genid123" + "@id" : "_:genid121" } ], "http://www.w3.org/2000/01/rdf-schema#isDefinedBy" : [ { "@id" : "http://semanticscience.org/ontology/sio.owl" @@ -3511,7 +3507,7 @@ "@value" : "has value" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { - "@id" : "_:genid132" + "@id" : "_:genid130" } ], "https://w3id.org/eboca/sem-disnet#disnetLabel" : [ { "@value" : "Has Value" @@ -3552,7 +3548,7 @@ "@value" : "nlp+" } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { - "@id" : "_:genid100" + "@id" : "_:genid99" } ], "http://www.w3.org/2000/01/rdf-schema#isDefinedBy" : [ { "@id" : "http://semanticscience.org/ontology/sio.owl" @@ -3562,7 +3558,7 @@ "@value" : "refers to" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { - "@id" : "_:genid107" + "@id" : "_:genid106" } ], "https://w3id.org/eboca/sem-disnet#disnetLabel" : [ { "@value" : "Refers To" diff --git a/SEM-DISNET Documentation/ontology.nt b/SEM-DISNET Documentation/ontology.nt index c52721f4ce1ce5c7c5831a278f71505cc1363245..c6280fc9ee42799fe4e964930ddb1ca0070947a4 100644 --- a/SEM-DISNET Documentation/ontology.nt +++ b/SEM-DISNET Documentation/ontology.nt @@ -724,8 +724,7 @@ _:genid56 . . _:genid59 . -_:genid59 _:genid68 . -_:genid68 _:genid67 . +_:genid59 _:genid67 . _:genid67 _:genid66 . _:genid66 _:genid65 . _:genid65 _:genid64 . @@ -736,44 +735,42 @@ _:genid61 _:genid60 . _:genid60 . _:genid60 . _:genid60 . -_:genid61 . +_:genid61 . _:genid61 . -_:genid62 . +_:genid62 . _:genid62 . -_:genid63 . +_:genid63 . _:genid63 . -_:genid64 . +_:genid64 . _:genid64 . -_:genid65 . +_:genid65 . _:genid65 . -_:genid66 . +_:genid66 . _:genid66 . -_:genid67 . +_:genid67 . _:genid67 . -_:genid68 . -_:genid68 . _:genid59 . - _:genid69 . -_:genid69 _:genid75 . -_:genid75 _:genid74 . + _:genid68 . +_:genid68 _:genid74 . _:genid74 _:genid73 . _:genid73 _:genid72 . _:genid72 _:genid71 . _:genid71 _:genid70 . -_:genid70 . -_:genid70 . +_:genid70 _:genid69 . +_:genid69 . +_:genid69 . +_:genid69 . +_:genid70 . _:genid70 . -_:genid71 . +_:genid71 . _:genid71 . -_:genid72 . +_:genid72 . _:genid72 . -_:genid73 . +_:genid73 . _:genid73 . -_:genid74 . +_:genid74 . _:genid74 . -_:genid75 . -_:genid75 . -_:genid69 . +_:genid68 . "SIO_000212" . "A is referred to by B iff B is an informational entity that makes reference to A."@en . . @@ -784,33 +781,33 @@ _:genid69 . . . - _:genid76 . -_:genid76 _:genid79 . -_:genid79 _:genid78 . + _:genid75 . +_:genid75 _:genid78 . _:genid78 _:genid77 . -_:genid77 . -_:genid77 . +_:genid77 _:genid76 . +_:genid76 . +_:genid76 . +_:genid76 . +_:genid77 . _:genid77 . -_:genid78 . +_:genid78 . _:genid78 . -_:genid79 . -_:genid79 . -_:genid76 . - _:genid80 . -_:genid80 _:genid84 . -_:genid84 _:genid83 . +_:genid75 . + _:genid79 . +_:genid79 _:genid83 . _:genid83 _:genid82 . _:genid82 _:genid81 . -_:genid81 . -_:genid81 . +_:genid81 _:genid80 . +_:genid80 . +_:genid80 . +_:genid80 . +_:genid81 . _:genid81 . -_:genid82 . +_:genid82 . _:genid82 . -_:genid83 . +_:genid83 . _:genid83 . -_:genid84 . -_:genid84 . -_:genid80 . +_:genid79 . "SIO_000215" . "is measurement value of is a relation between a value and the entity that it is a measurement of."@en . . @@ -820,33 +817,33 @@ _:genid80 . . - _:genid85 . -_:genid85 _:genid89 . -_:genid89 _:genid88 . + _:genid84 . +_:genid84 _:genid88 . _:genid88 _:genid87 . _:genid87 _:genid86 . -_:genid86 . -_:genid86 . +_:genid86 _:genid85 . +_:genid85 . +_:genid85 . +_:genid85 . +_:genid86 . _:genid86 . -_:genid87 . +_:genid87 . _:genid87 . -_:genid88 . +_:genid88 . _:genid88 . -_:genid89 . -_:genid89 . -_:genid85 . - _:genid90 . -_:genid90 _:genid93 . -_:genid93 _:genid92 . +_:genid84 . + _:genid89 . +_:genid89 _:genid92 . _:genid92 _:genid91 . -_:genid91 . -_:genid91 . +_:genid91 _:genid90 . +_:genid90 . +_:genid90 . +_:genid90 . +_:genid91 . _:genid91 . -_:genid92 . +_:genid92 . _:genid92 . -_:genid93 . -_:genid93 . -_:genid90 . +_:genid89 . "SIO_000216" . "has measurement value is a relation between a quality/realizable and a measurement value."@en . "core" . @@ -857,15 +854,15 @@ _:genid90 . . - _:genid94 . -_:genid94 _:genid96 . -_:genid96 _:genid95 . -_:genid95 . -_:genid95 . + _:genid93 . +_:genid93 _:genid95 . +_:genid95 _:genid94 . +_:genid94 . +_:genid94 . +_:genid94 . +_:genid95 . _:genid95 . -_:genid96 . -_:genid96 . -_:genid94 . +_:genid93 . . "SIO_000291" . "has target is a relation between a process and an entity, where the entity is present at the beginning of the process and undergoes a change or transformation in the process."@en . @@ -876,15 +873,15 @@ _:genid94 . . - _:genid97 . -_:genid97 _:genid99 . -_:genid99 _:genid98 . -_:genid98 . -_:genid98 . + _:genid96 . +_:genid96 _:genid98 . +_:genid98 _:genid97 . +_:genid97 . +_:genid97 . +_:genid97 . +_:genid98 . _:genid98 . -_:genid99 . -_:genid99 . -_:genid97 . +_:genid96 . "SIO_000292" . "is target in is a relation between an entity and a process, where the entity is present at the beginning of the process and undergoes a change or transformation in the process."@en . . @@ -894,57 +891,54 @@ _:genid97 . - _:genid100 . -_:genid100 _:genid106 . -_:genid106 _:genid105 . + _:genid99 . +_:genid99 _:genid105 . _:genid105 _:genid104 . _:genid104 _:genid103 . _:genid103 _:genid102 . _:genid102 _:genid101 . -_:genid101 . -_:genid101 . +_:genid101 _:genid100 . +_:genid100 . +_:genid100 . +_:genid100 . +_:genid101 . _:genid101 . -_:genid102 . +_:genid102 . _:genid102 . -_:genid103 . +_:genid103 . _:genid103 . -_:genid104 . +_:genid104 . _:genid104 . -_:genid105 . +_:genid105 . _:genid105 . -_:genid106 . -_:genid106 . -_:genid100 . - _:genid107 . -_:genid107 _:genid116 . -_:genid116 _:genid115 . -_:genid115 _:genid114 . +_:genid99 . + _:genid106 . +_:genid106 _:genid114 . _:genid114 _:genid113 . _:genid113 _:genid112 . _:genid112 _:genid111 . _:genid111 _:genid110 . _:genid110 _:genid109 . _:genid109 _:genid108 . -_:genid108 . -_:genid108 . +_:genid108 _:genid107 . +_:genid107 . +_:genid107 . +_:genid107 . +_:genid108 . _:genid108 . -_:genid109 . +_:genid109 . _:genid109 . -_:genid110 . +_:genid110 . _:genid110 . -_:genid111 . +_:genid111 . _:genid111 . -_:genid112 . +_:genid112 . _:genid112 . -_:genid113 . +_:genid113 . _:genid113 . -_:genid114 . +_:genid114 . _:genid114 . -_:genid115 . -_:genid115 . -_:genid116 . -_:genid116 . -_:genid107 . +_:genid106 . "SIO_000628" . "refers to is a relation between one entity and the entity that it makes reference to."@en . "core" . @@ -1115,15 +1109,15 @@ _:genid107 . - _:genid117 . -_:genid117 _:genid119 . -_:genid119 _:genid118 . -_:genid118 . -_:genid118 . -_:genid118 . -_:genid119 . -_:genid119 . -_:genid117 . + _:genid115 . +_:genid115 _:genid117 . +_:genid117 _:genid116 . +_:genid116 . +_:genid116 . +_:genid116 . +_:genid117 . +_:genid117 . +_:genid115 . . "" . "The ChEMBL ID for a given entity" . @@ -1132,15 +1126,15 @@ _:genid117 . - _:genid120 . -_:genid120 _:genid122 . -_:genid122 _:genid121 . -_:genid121 . -_:genid121 . -_:genid121 . -_:genid122 . -_:genid122 . -_:genid120 . + _:genid118 . +_:genid118 _:genid120 . +_:genid120 _:genid119 . +_:genid119 . +_:genid119 . +_:genid119 . +_:genid120 . +_:genid120 . +_:genid118 . . "The highest phase the molecule has reached in drug approval process (4 = approved)" . "ChEMBL Molecule Development Phase" . @@ -1184,45 +1178,45 @@ _:genid120 . . - _:genid123 . -_:genid123 _:genid131 . -_:genid131 _:genid130 . -_:genid130 _:genid129 . + _:genid121 . +_:genid121 _:genid129 . _:genid129 _:genid128 . _:genid128 _:genid127 . _:genid127 _:genid126 . _:genid126 _:genid125 . _:genid125 _:genid124 . -_:genid124 . -_:genid124 . +_:genid124 _:genid123 . +_:genid123 _:genid122 . +_:genid122 . +_:genid122 . +_:genid122 . +_:genid123 . +_:genid123 . +_:genid124 . _:genid124 . -_:genid125 . +_:genid125 . _:genid125 . -_:genid126 . +_:genid126 . _:genid126 . -_:genid127 . +_:genid127 . _:genid127 . -_:genid128 . +_:genid128 . _:genid128 . -_:genid129 . +_:genid129 . _:genid129 . -_:genid130 . -_:genid130 . -_:genid131 . +_:genid121 . + _:genid130 . +_:genid130 _:genid133 . +_:genid133 _:genid132 . +_:genid132 _:genid131 . +_:genid131 . +_:genid131 . _:genid131 . -_:genid123 . - _:genid132 . -_:genid132 _:genid135 . -_:genid135 _:genid134 . -_:genid134 _:genid133 . -_:genid133 . -_:genid133 . +_:genid132 . +_:genid132 . +_:genid133 . _:genid133 . -_:genid134 . -_:genid134 . -_:genid135 . -_:genid135 . -_:genid132 . +_:genid130 . "SIO_000300" . "A relation between a informational entity and its actual value (numeric, date, text, etc)."@en . "sadi"@en . @@ -1962,11 +1956,11 @@ _:genid132 "Phenotypic abnormality" . "HP:0000118" . "Disease class" . -_:genid136 . -_:genid136 . -_:genid136 . -_:genid136 "A phenotypic abnormality." . -_:genid136 "HPO:probinson" . +_:genid134 . +_:genid134 . +_:genid134 . +_:genid134 "A phenotypic abnormality." . +_:genid134 "HPO:probinson" . # # http://purl.obolibrary.org/obo/PR_000000001 . @@ -1984,28 +1978,28 @@ _:genid136 "HPO:probins "SO:0001060" . "sequence_variant" . "Variant" . +_:genid135 . +_:genid135 . +_:genid135 . +_:genid135 "A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." . +_:genid135 "SO:ke" . +_:genid136 . +_:genid136 . +_:genid136 . +_:genid136 "Jannovar:sequence_variant" . +_:genid136 "http://doc-openbio.readthedocs.org/projects/jannovar/en/master/var_effects.html" . +_:genid136 . _:genid137 . _:genid137 . -_:genid137 . -_:genid137 "A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration." . -_:genid137 "SO:ke" . +_:genid137 . +_:genid137 "VAAST:sequence_variant" . +_:genid137 . _:genid138 . _:genid138 . -_:genid138 . -_:genid138 "Jannovar:sequence_variant" . -_:genid138 "http://doc-openbio.readthedocs.org/projects/jannovar/en/master/var_effects.html" . +_:genid138 . +_:genid138 "ANNOVAR:unknown" . +_:genid138 "http://www.openbioinformatics.org/annovar/annovar_download.html" . _:genid138 . -_:genid139 . -_:genid139 . -_:genid139 . -_:genid139 "VAAST:sequence_variant" . -_:genid139 . -_:genid140 . -_:genid140 . -_:genid140 . -_:genid140 "ANNOVAR:unknown" . -_:genid140 "http://www.openbioinformatics.org/annovar/annovar_download.html" . -_:genid140 . # # http://rdf.ebi.ac.uk/terms/chembl#DrugIndication . diff --git a/SEM-DISNET Documentation/ontology.rdf b/SEM-DISNET Documentation/ontology.rdf index b712b44185502060c226ee1c8a08a70f2db323a2..34bb973c1b66db507e58e265de468e7404ae50f3 100644 --- a/SEM-DISNET Documentation/ontology.rdf +++ b/SEM-DISNET Documentation/ontology.rdf @@ -1131,7 +1131,6 @@ OEG website: https://oeg.fi.upm.es/ - @@ -1297,7 +1296,6 @@ OEG website: https://oeg.fi.upm.es/ - diff --git a/SEM-DISNET Documentation/ontology.ttl b/SEM-DISNET Documentation/ontology.ttl index 0a6dab222b5acdd48231c04ca2835f7a7490f1a8..973c28a447b7c5f17251ad7e00793d05abc96d56 100644 --- a/SEM-DISNET Documentation/ontology.ttl +++ b/SEM-DISNET Documentation/ontology.ttl @@ -755,7 +755,6 @@ owl:versionIRI rdf:type owl:AnnotationProperty . - :Phenotype ) ] ; @@ -874,7 +873,6 @@ owl:versionIRI rdf:type owl:AnnotationProperty . - :Phenotype ) ] ; diff --git a/SEM-DISNET Documentation/provenance/provenance-en.html b/SEM-DISNET Documentation/provenance/provenance-en.html index 273a6da11c9776273953fd9b3426a6e1172efddb..2ac09047c8fb4aaa1ba16df4f354d3898e238e65 100644 --- a/SEM-DISNET Documentation/provenance/provenance-en.html +++ b/SEM-DISNET Documentation/provenance/provenance-en.html @@ -7,7 +7,7 @@
-

Provenance for SEM-DISNET Documentation (/home/andrea/Documentos/SEM-DISNET_w3id/Documentacion)

+

Provenance for SEM-DISNET Documentation (/home/andrea/Documentos/SEM-DISNET_w3id/SEM-DISNET_w3id-Documentation)

  • Ontology created by: MEDAL: https://medal.ctb.upm.es/ OEG: https://oeg.fi.upm.es/
  • Ontology contributed to by: Andrea Álvarez Pérez (MEDAL)