diff --git "a/Network Science/Data/Archivo_s\303\255ntomas.ipynb" "b/Network Science/Data/Archivo_s\303\255ntomas.ipynb" new file mode 100644 index 0000000000000000000000000000000000000000..4441aacdd652cefe0c06a482208176a88af9ee00 --- /dev/null +++ "b/Network Science/Data/Archivo_s\303\255ntomas.ipynb" @@ -0,0 +1,123 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 10, + "id": "d6b3c349-ae07-4be2-8e13-79fd26936534", + "metadata": {}, + "outputs": [], + "source": [ + "import pandas as pd\n", + "import numpy as np\n", + "import seaborn as sns #este no sé para qué se usa -> creación de gráficos \n", + "import matplotlib.pyplot as plt\n", + "import networkx as nx\n", + "import csv" + ] + }, + { + "cell_type": "code", + "execution_count": 11, + "id": "5daac64f-9764-4076-98a2-f83b8fcdc836", + "metadata": {}, + "outputs": [], + "source": [ + "cuis = pd.read_csv('cuis_stys.csv')\n", + "cuis.to_csv('cuis_stys.tsv', sep='\\t', index=False)\n", + "dse_sym = pd.read_csv('Links/dse_sym.tsv', sep=\"\\t\")" + ] + }, + { + "cell_type": "code", + "execution_count": 13, + "id": "e3419cdc-7664-4614-ae50-2808ef2b9135", + "metadata": {}, + "outputs": [], + "source": [ + "#hago una lista con las enfermedades y otra con los síntomas del archivo cuis:\n", + "enfs = []\n", + "syms = []\n", + "syms_cui=[]\n", + "for i, sym in enumerate(cuis[\"TUI\"]):\n", + " if sym == \"T184\":\n", + " #syms.append(sym) #lista con los TUI de los síntomas\n", + " syms_cui.append(cuis[\"CUI\"][i]) #lista con los CUI de los síntomas\n", + " else:\n", + " enfs.append(cuis[\"CUI\"][i]) #lista con los CUI de las enfermedades (las que no tienen el TUI correcto)" + ] + }, + { + "cell_type": "code", + "execution_count": 46, + "id": "e57fcada-20f1-4b90-982a-98445e0f8a4a", + "metadata": {}, + "outputs": [], + "source": [ + "syms_original=[]\n", + "enf_original=[]\n", + "for s1 in syms_cui: # Recorrer la lista de síntomas\n", + " for i, s2 in enumerate(dse_sym[\"sym\"]): # Recorrer la columna de síntomas del archivo original\n", + " if s1 == s2: # Si uno de tus síntomas está en la columna de síntomas original\n", + " enfermedad_cui = dse_sym[\"dse\"][i] # Obtener el código CUI de la enfermedad\n", + " if enfermedad_cui not in syms_cui:\n", + " enf_original.append(enfermedad_cui)\n", + " syms_original.append(s1)\n", + " #print(str(enfermedad_cui) + \" es enfermedad y \" + str(s1) + \" es síntoma\")\n", + " \n", + "#no hay posibilidad de relaciones enf - enf porque solo establecemos relaciones en el diccionario con los syms con TUI de síntoma." + ] + }, + { + "cell_type": "code", + "execution_count": 51, + "id": "ce815fa0-610c-4a3e-b8d3-3ace87432d93", + "metadata": {}, + "outputs": [], + "source": [ + "#escribo el nombre de las columnas en el nuevo archivo\n", + "arch = pd.DataFrame({\"dse\": enf_original, \"sym\": syms_original})\n", + "dse_sym_limpio = \"dse_sym_limpio.csv\"\n", + "arch.to_csv(\"dse_sym_limpio.tsv\", sep =\"\\t\",index=False)" + ] + }, + { + "cell_type": "code", + "execution_count": 52, + "id": "8f6fc9e2-748b-457a-87bd-59763f142dc9", + "metadata": {}, + "outputs": [], + "source": [ + "dse_sym_limpio_f = pd.read_csv(\"dse_sym_limpio.tsv\", sep =\"\\t\")" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "11fdf2fd-f381-4752-b146-b9555d22fe2a", + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.11.6" + } + }, + "nbformat": 4, + "nbformat_minor": 5 +}