data

Code statistical methods/Analysis of similarities - patterns significance - Simi_AA2.ipynb → Code statistical methods/Analysis of similarities - patterns significance - Simi_AA2-paper.ipynb

@@ -10,7 +10,7 @@
     "\n",
     "Author: Belén Otero Carrasco\n",
     "\n",
-    "Last updated 24 April 2024\n",
+    "Last updated 25 september 2024\n",
     "\n",
     "--------------------------------------------------------------------------------"
    ]
@@ -1371,7 +1371,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 13,
+   "execution_count": 10,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -1383,19 +1383,15 @@
     "full = pd.DataFrame(full)\n",
     "treatvscan = simi_treatvscan['similaridadAA_2']\n",
     "treatvscan = pd.DataFrame(treatvscan)\n",
-    "immune = simi_immune[\"similaridadAA_2\"]\n",
-    "immune = pd.DataFrame(immune)\n",
-    "rare = simi_rare[\"similaridadAA_2\"]\n",
-    "rare = pd.DataFrame(rare)\n",
+    "\n",
     "\n",
     "treat[\"Group\"] = \"Treatment_lung\"\n",
     "disease[\"Group\"] = \"Disease_lung\"\n",
     "full[\"Group\"] = \"Full_protein_lung\"\n",
     "treatvscan[\"Group\"] = \"Cancers\"\n",
-    "immune[\"Group\"] = \"Immune_diseases\"\n",
-    "rare[\"Group\"] = \"Rare_diseases\"\n",
     "\n",
-    "groups = pd.concat([treat,disease,full,treatvscan,immune,rare])"
+    "\n",
+    "groups = pd.concat([treat,disease,full,treatvscan])"
    ]
   },
   {
@@ -1538,7 +1534,7 @@
     "import matplotlib.pyplot as plt\n",
     "\n",
     "# Definir una paleta de colores derivados del azul\n",
-    "my_colors = [\"#1b4332\", \"#40916c\", \"#52b788\", \"#74c69d\", \"#95d5b2\", \"#d8f3dc\"]\n",
+    "my_colors = [\"#1b4332\", \"#40916c\", \"#52b788\", \"#d8f3dc\"]\n",
     "\n",
     "# Configurar la paleta de colores\n",
     "sns.set_palette(my_colors)\n",
@@ -1548,7 +1544,7 @@
     "\n",
     "# Graficar el boxenplot\n",
     "sns.boxenplot(x=\"similaridadAA_2\", y=\"Group\", data=groups, \n",
-    "              width=0.7, order=[\"Treatment_lung\", \"Disease_lung\", \"Full_protein_lung\", \"Cancers\",\"Immune_diseases\",\"Rare_diseases\"],\n",
+    "              width=0.7, order=[\"Treatment_lung\", \"Disease_lung\", \"Full_protein_lung\", \"Cancers\"],\n",
     "              showfliers=True)\n",
     "\n",
     "# Personalizar ejes y eliminar despine\n",