code, input and output

8815cad7 · Belen Otero Carrasco · 8815cad7 · 8815cad7 · 8815cad7 · 8815cad7
Commit 8815cad7 authored Apr 03, 2025 by Belen Otero Carrasco
13 changed files
--- a/Code/DREBIOP - Enrichment pathways analysis - Network proximity .ipynb
+++ b/Code/DREBIOP - Enrichment pathways analysis - Network proximity .ipynb
--- a/Input/Genes_in_pathways.csv
+++ b/Input/Genes_in_pathways.csv
--- a/Input/data_dr_pathways_names.csv
+++ b/Input/data_dr_pathways_names.csv
--- a/Input/disease_drug_T.csv
+++ b/Input/disease_drug_T.csv
--- a/Input/disease_gene_gdas.csv
+++ b/Input/disease_gene_gdas.csv
--- a/Input/drug_cmap_iname.csv
+++ b/Input/drug_cmap_iname.csv
--- a/Input/drugs_clue_name.csv
+++ b/Input/drugs_clue_name.csv
--- a/Input/new_signame_tas_exemplar.xlsx
+++ b/Input/new_signame_tas_exemplar.xlsx
--- a/Input/newdisease_pathway_drug_proximity.csv
+++ b/Input/newdisease_pathway_drug_proximity.csv
--- a/Input/newdisease_pathway_drug_proximity_genes.csv
+++ b/Input/newdisease_pathway_drug_proximity_genes.csv
--- a/Output/detailed_triplets_with_best_drug.xlsx
+++ b/Output/detailed_triplets_with_best_drug.xlsx
--- a/Output/top_10_best_cases_z_score.xlsx
+++ b/Output/top_10_best_cases_z_score.xlsx
--- a/Output/triples_155.csv
+++ b/Output/triples_155.csv
+,disease_id_x,pathway_id,disease_id_y,count
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+2,C0002395,WP673,C0006826,6856960
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+4,C0003125,WP2355,C0002395,125856
+5,C0003125,WP2355,C0030567,152352
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+15,C0003723,WP4912,C1175175,15
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+135,C1306837,WP2828,C0005686,40248
+136,C1306837,WP2828,C0005695,124098
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+138,C1306837,WP4205,C0006826,9159
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+143,C1336078,WP2828,C1306837,7722
+144,C1336078,WP4205,C0006826,924
+145,C1336078,WP4205,C1306837,297
+146,C1720859,WP4879,C0033141,25281
+147,C1720859,WP4879,C0036529,25281
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+149,C1720860,WP4879,C0033141,28090
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