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COMPARA
covid_analysis
Commits
66deda66
Commit
66deda66
authored
May 27, 2024
by
Joaquin Torres
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Preparing code to plot distribution of cv metrics
parent
9aee207f
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model_selection/cv_metrics_distr.py
model_selection/cv_metrics_distr.py
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model_selection/cv_metrics_distr.py
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66deda66
"""
Plotting the distribution of the metrics obtained from cv via boxplots.
"""
# Libraries
# --------------------------------------------------------------------------------------------------------
import
pandas
as
pd
import
matplotlib.pyplot
as
plt
# Corrected import
# --------------------------------------------------------------------------------------------------------
if
__name__
==
"__main__"
:
metric_names
=
[
'F1'
,
'PREC'
,
'REC'
,
'ACC'
,
'NREC'
,
'TN'
,
'FN'
,
'FP'
,
'TP'
,
'AUROC'
,
'AUPRC'
]
model_names_simple
=
[
'DT'
,
'RF'
,
'Bagging'
,
'AB'
,
'XGB'
,
'LR'
,
'SVM'
,
'MLP'
]
model_names_cs
=
[
'DT'
,
'RF'
,
'Bagging'
,
'AB'
,
'LR'
,
'SVM'
]
# Distribution of cv metrics
# --------------------------------------------------------------------------------------------------------
for
group
in
[
'pre'
,
'post'
]:
for
method
in
[
'_ORIG'
,
'_ORIG_CW'
,
'_OVER'
,
'_UNDER'
]:
# Read current sheet as df
df
=
pd
.
read_excel
(
'./output_cv_metrics/metrics.xlsx'
,
sheet_name
=
group
+
method
)
# Model names based on cost-senstive training or not
if
method
==
'_ORIG_CW'
:
model_names
=
model_names_cs
else
:
model_names
=
model_names_simple
# Create figure for current sheet, one row per metric
fig
,
axes
=
plt
.
subplots
(
len
(
metric_names
),
1
,
figsize
=
(
15
,
8
*
len
(
metric_names
)))
for
metric_id
,
metric_name
in
enumerate
(
metric_names
):
# Get the axis for the current metric
ax
=
axes
[
metric_id
]
for
model_name
in
model_names
:
row_name
=
f
'{model_name}_{metric_name}'
# Collect data for the current model's metric
metric_row
=
df
.
loc
[
df
[
'Unnamed: 0'
]
==
row_name
]
.
iloc
[
0
,
1
:]
.
values
if
group
==
'pre'
and
method
==
'_ORIG'
and
metric_id
==
0
and
model_name
==
'DT'
:
print
(
metric_row
)
# --------------------------------------------------------------------------------------------------------
\ No newline at end of file
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