"Cell \u001b[0;32mIn[1], line 2\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[38;5;66;03m# Define tolerance\u001b[39;00m\n\u001b[0;32m----> 2\u001b[0m tolerance \u001b[38;5;241m=\u001b[39m \u001b[43mnp\u001b[49m\u001b[38;5;241m.\u001b[39mmedian(np\u001b[38;5;241m.\u001b[39mabs(dist_matrix)) \u001b[38;5;66;03m# Use the median of the absolute values for tolerance\u001b[39;00m\n\u001b[1;32m 4\u001b[0m \u001b[38;5;66;03m# Create a DataFrame to hold the interactions\u001b[39;00m\n\u001b[1;32m 5\u001b[0m interactions \u001b[38;5;241m=\u001b[39m []\n",
"\u001b[0;31mNameError\u001b[0m: name 'np' is not defined"
]
}
],
"outputs": [],
"source": [
"# Define tolerance\n",
"tolerance = np.median(np.abs(dist_matrix)) # Use the median of the absolute values for tolerance\n",