utilities.py

import numpy as np
import pandas as pd
import sklearn.metrics as metrics
import matplotlib.pyplot as plt

"""
Calculate and plot ROC curve.
Input:
    y_test: Real labels.
    preds: Predictions.
    edge: Edge to study.
    extension: Extension to the figure file.
Output:
    False positive and true positive rate and the area under the curve.
"""
def plot_roc(y_test, preds, edge, extension=''):
    fpr, tpr, threshold = metrics.roc_curve(y_test, preds)
    roc_auc = metrics.auc(fpr, tpr)

    label = " ".join(edge) + " " + 'AUC = %0.2f' % roc_auc
    fileName = 'metrics/aucroc' + extension + '.svg'
    random = [[0, 1], [0, 1], 'r--']

    plotAndSaveFig(title='ROC Curve', x=fpr, y=tpr, label=label, path=fileName,
                   loc='lower right', xlim=[0, 1], ylim=[0, 1], xlabel='False Positive Rate',
                   ylabel='True Positive Rate', random=random)

    print("AUC:", roc_auc)
    return fpr, tpr, roc_auc


"""
Calculate and plot PR curve.
Input:
    y_test: Real labels.
    preds: Predictions.
    edge: Edge to study.
    extension: Extension to the figure file.
Output:
    Recall, precision and the area under the curve.
"""
def plot_prc(y_true, y_pred, edge, extension=''):
    precision, recall, trhesholds = metrics.precision_recall_curve(y_true, y_pred)
    average_precision = metrics.average_precision_score(y_true, y_pred)

    label = " ".join(edge) + " " + 'RPC = %0.2f' % average_precision
    fileName = 'metrics/prc' + extension + '.svg'

    plotAndSaveFig(title='Precision-Recall Curve', x=recall, y=precision, label=label, path=fileName,
                   loc='lower right', xlim=[0, 1], ylim=[0, 1], xlabel='Recall', ylabel='Precision')

    print("PRC:", average_precision)
    return recall, precision, average_precision


"""
Plot distribution of predictions of the true and random edges. Plots the distribution function and histogram.
Input:
    extension: Extension to the figure file.
"""
def plot_dist(extension=''):
    preds = [pd.read_csv('results/dis_dru_the_5013_table.csv'), pd.read_csv('results/dis_dru_the_5013R_table.csv')]
    df = pd.DataFrame(data={'RepoDB': preds[0]['pred'], 'Random': preds[1]['pred']})

    ax = df.plot.hist(bins=50, alpha=0.5)
    ax.set_xticks(np.arange(0, 1.1, 0.1))
    ax.set_title('RepoDB & Random Prediction Histogram')
    ax.set_xlabel('Prediction Score')
    ax.figure.savefig('results/histogram' + extension + '.svg', format='svg', dpi=1200)
    ax.figure.clf()

    bx = df.plot.kde()
    bx.set_title('RepoDB & Random Prediction')
    bx.set_xlabel('Prediction Score')
    bx.figure.savefig('results/distribution' + extension + '.svg', format='svg', dpi=1200)
    bx.set_xlim([0, 1])
    bx.figure.savefig('results/distribution01' + extension + '.svg', format='svg', dpi=1200)
    bx.figure.clf()


"""
It plots and saves the figure sent.
Input:
    title: Title of the plot.
    x: X axis.
    y: Y axis.
    label: Label of the plot.
    path: Path to save the figure.
    loc: Location of the legend.
    xlim: Limit of the X axis.
    ylim: Limit of the Y axis.
    xlabel: Label of the X axis.
    ylabel: Label of the Y axis.
    random: Random selector.
"""
def plotAndSaveFig(title, x, y, label, path, loc=None, xlim=None, ylim=None, xlabel=None, ylabel=None, random=None):
    plt.title(title)
    plt.plot(x, y, label=label)

    if loc is not None:
        plt.legend(loc=loc)

    if xlim is not None:
        plt.xlim(xlim)

    if ylim is not None:
        plt.ylim(ylim)

    if xlabel is not None:
        plt.xlabel(xlabel)

    if ylabel is not None:
        plt.ylabel(ylabel)

    if random is not None:
        plt.plot(random[0], random[1], random[2])

    plt.show()
    plt.savefig(path, format='svg', dpi=1200)
    plt.clf()


"""
It plots and saves together the figures sent.
Input:
    title: Title of the plot.
    x: X axis.
    y: Y axis.
    label: Label of the plot.
    path: Path to save the figure.
    loc: Location of the legend.
    xlim: Limit of the X axis.
    ylim: Limit of the Y axis.
    xlabel: Label of the X axis.
    ylabel: Label of the Y axis.
    random: Random selector.
"""
def plotTogether(title, x, y, label, path, loc=None, xlim=None, ylim=None, xlabel=None, ylabel=None, random=None):
    figH, axs = plt.subplots(2, figsize=(6, 10))
    figV, axs2 = plt.subplots(1, 2, figsize=(12, 4))

    for i, elem in enumerate(axs):
        elem.plot(x[i], y[i], label=label[i])
        elem.set_title(title[i])

        if loc[i] is not None:
            elem.legend(loc=loc[i])

        if random[i] is not None:
            elem.plot(random[i][0], random[i][1], random[i][2])

        if xlim[i] is not None:
            elem.set_xlim(xlim[i])

        if ylim[i] is not None:
            elem.set_ylim(ylim[i])

        if xlabel[i] is not None:
            elem.set_xlabel(xlabel)

        if ylabel[i] is not None:
            elem.set_ylabel(ylabel)

    axs2[0] = axs[0]
    axs2[1] = axs[1]

    figH.savefig(path[0], format='svg', dpi=1200)
    figV.savefig(path[1], format='svg', dpi=1200)