README.md

# Embeddings in DR

Additional `data.xlsx` descriptionExcel file with different sheets that contain the data used in the analysis.
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- **DR cases – repoDB**

Drug repurposing cases extracted from the repoDB database. We excluded those cases where the disease and the drug shared the drug target protein. The GDA score wasdepicted too.

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- **DR cases – Literature**

Drug repurposing cases selected from the Literature1. We excluded those cases where the disease and the drug shared the drug target protein. Moreover, we only consideredthe new disease for which the drug was repositioned and not the original one for whichit was indicated. Cases where the disease and the drug shared the target protein were excluded. The GDA score was depicted too.

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- **PP – repoDB**

Unique protein pairs from the drug repurposing repoDB cases.

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- **PP – Literature**

Unique protein pairs from the drug repurposing literature cases.

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- **PP by class – repoDB**

Protein pairs filtered by PANTHERdb class from the drug repurposing repoDB cases. We made sure the pairs did not share class or classes.

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- **PP by class – Literature**

Protein pairs filtered by PANTHERdb class from the drug repurposong literature cases.We made sure the pairs did not share class or classes.

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- **PP – Distances**

The distance value for each protein pair is included for every embedding method. We indicated if the protein pair belonged to repoDB, Literature or both datasets.

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- **PP by class – Distances**

The distance value for each protein pair filtered by PANTHERdb class is included forevery embedding method. We indicated if the protein pair belongede to repoDB, Literature or both datasets.