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2. Supplementary files for protein data used in the study, sequence embeddings from the four reviewed methods and protein pair distances, available in [](https://drive.upm.es/s/egBAv71on4AgBdn?path=%2Fdata)
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**File folder structure**
* **File folder structure**
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**[1].-** Prieto Santamaría L, Ugarte Carro E, Díaz Uzquiano M, Menasalvas Ruiz E, Pérez Gallardo Y, Rodríguez-González A. A data-driven methodology towards evaluating the potential of drug repurposing hypotheses. Comput Struct Biotechnol J. 2021 Aug 9;19:4559-4573. doi: 10.1016/j.csbj.2021.08.003. PMID: 34471499; PMCID: PMC8387760.
**[1].-** *Prieto Santamaría L, Ugarte Carro E, Díaz Uzquiano M, Menasalvas Ruiz E, Pérez Gallardo Y, Rodríguez-González A. A data-driven methodology towards evaluating the potential of drug repurposing hypotheses. Comput Struct Biotechnol J. 2021 Aug 9;19:4559-4573. doi: 10.1016/j.csbj.2021.08.003. PMID: 34471499; PMCID: PMC8387760.*
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**[2].-** Brown AS, Patel CJ. A standard database for drug repositioning. Sci Data. 2017 Mar 14;4:170029. doi: 10.1038/sdata.2017.29. PMID: 28291243; PMCID: PMC5349249.
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**[2].-** *Brown AS, Patel CJ. A standard database for drug repositioning. Sci Data. 2017 Mar 14;4:170029. doi: 10.1038/sdata.2017.29. PMID: 28291243; PMCID: PMC5349249.*
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