@@ -43,10 +43,13 @@ When everything is set up, you can run the different algorithms locally or in do
```bash
python main.py
```
For adding the thersholds analysis,
To run the analysis implementing the GDA score, execute:
```bash
python main.py --thresholds
```
This creates gene lists based on GDA score thresholds in intervals [x,1], where x ranges from 0 to 0.9 in steps of 0.1. The analysis applies to the LCC, DOMINO, ROBUST, and TOPAS methods.
For DIAMOnD, seed genes are weighted by GDA score: scores are grouped into intervals [x, x+0.1), and seeds receive weights from 1 to 10 (e.g., [0,0.1) = 1, ..., [0.9, 1] = 10), increasing their influence in the module construction.