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Harmonize_Scripts
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Uncover
Harmonize_Scripts
Commits
52f4db3d
Commit
52f4db3d
authored
Feb 14, 2023
by
Pepe Márquez Romero
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empezando a modificar el script remoto
parent
011cb357
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3
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3 changed files
with
333 additions
and
356 deletions
+333
-356
connection_parameters.R
connection_parameters.R
+206
-206
valid_variables_script.R
valid_variables_script.R
+123
-146
valid_variables_script_local.R
valid_variables_script_local.R
+4
-4
No files found.
connection_parameters.R
View file @
52f4db3d
hospital_names
<-
c
(
#Añadir Los de Baskent y sacrocuore
"Princesa"
,
"CIPH"
,
"UMF_Iasis"
,
"SMUC"
,
"HM"
,
"Porto"
,
"FJD"
,
"Coimbra"
,
"UNAV"
,
"TU"
,
"Ankara Impatient"
,
"Konya Impatient"
,
"Istambul Impatient"
,
"Izmir Impatient"
,
"Alanya Impatient"
,
"Adana Impatient"
,
"Ankara Outpatient"
,
"Konya Outpatient"
,
"Istambul Outpatient"
,
"Izmir Outpatient"
,
"Alanya Outpatient"
,
"Sacrocuore Emergency"
,
"Sacrocuore Employees"
,
"Sacrocuore Verona"
,
"Sacrocuore Isaric"
,
"TUDublin"
,
"UMF_Cluj"
,
"UdeA"
,
"Inantro"
,
"UNSA"
,
"UZA"
)
project_names
<-
c
(
"FIBHULP"
,
"CIPH_unCoVer"
,
"umfiasi"
,
"SMUC"
,
"FiHM"
,
"uncover-up"
,
"IISFJD"
,
"IPC"
,
"unCOVer-UNAV"
,
"TU_Uncover"
,
"BU"
,
"BU"
,
"BU"
,
"BU"
,
"BU"
,
"BU"
,
"BU"
,
"BU"
,
"BU"
,
"BU"
,
"BU"
,
"S_uncover"
,
"S_uncover"
,
"S_uncover"
,
"S_uncover"
,
"TUDublin"
,
"UMF_Cluj"
,
"INS_Data"
,
"INANTRO"
,
"UnCoVer-BiH-Final"
,
"UZA"
)
resource_names
<-
c
(
"Harmonized_variables_2"
,
"CIPH_numeric_derivated"
,
"20220719_HarmonisedUMFIasi"
,
"SMUC_resource"
,
"20220
720_HarmonisedHM"
,
"Resource_derived"
,
"IISFJD_Harmonized_1"
,
"IPC_Harmonized"
,
"UNAV_rsc"
,
"TU_Harmonized"
,
"inpatient_ankara"
,
"inpatient_konya"
,
"inpatient_istanbul"
,
"inpatient_izmir"
,
"inpatient_alanya"
,
"inpatient_adana"
,
"outpatient_ankara"
,
"outpatient_konya"
,
"outpatient_istanbul"
,
"outpatient_izmir"
,
"outpatient_alanya"
,
"emergency"
,
"employees"
,
"verona"
,
"isaric"
,
"TUDublin_harmonised"
,
"Romania"
,
"colombia_all"
,
"Inantro"
,
"20220722_HarmonizedUNSA"
,
"UZA_prelim"
)
urls
<-
c
(
"https://192.168.1.200:8001"
,
"https://192.168.1.200:8002"
,
"https://192.168.1.200:8003"
,
"https://192.168.1.200:8006"
,
"https://192.168.1.50:9002"
,
"https://192.168.1.102"
,
"https://uncover.itg.be"
,
"https://uncover.itg.be"
,
"https://192.168.1.50:9001"
,
"https://192.168.1.200:8004"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.50:8890"
,
"https://192.168.1.50:8890"
,
"https://192.168.1.50:8890"
,
"https://192.168.1.50:8890"
,
"https://uncover.itg.be"
,
"https://192.168.1.200:8005"
,
"https://fenfisdi.udea.edu.co/opal"
,
"https://192.168.1.200:8007"
,
"https://192.168.1.200:8008"
,
"https://uncover.itg.be"
)
users
<-
c
(
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"emertens"
,
"emertens"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"emertens"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"emertens"
)
pass
<-
c
(
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"3^z4AV.)hG5~PT/]"
,
"3^z4AV.)hG5~PT/]"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"3^z4AV.)hG5~PT/]"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"3^z4AV.)hG5~PT/]"
)
hospital_names
<-
c
(
#Añadir Los de Baskent y sacrocuore
"Princesa"
,
"CIPH"
,
"UMF_Iasis"
,
"SMUC"
,
"HM"
,
"Porto"
,
"FJD"
,
"Coimbra"
,
"UNAV"
,
"TU"
,
"Ankara Impatient"
,
"Konya Impatient"
,
"Istambul Impatient"
,
"Izmir Impatient"
,
"Alanya Impatient"
,
"Adana Impatient"
,
"Ankara Outpatient"
,
"Konya Outpatient"
,
"Istambul Outpatient"
,
"Izmir Outpatient"
,
"Alanya Outpatient"
,
"Sacrocuore Emergency"
,
"Sacrocuore Employees"
,
"Sacrocuore Verona"
,
"Sacrocuore Isaric"
,
"TUDublin"
,
"UMF_Cluj"
,
"UdeA"
,
"Inantro"
,
"UNSA"
,
"UZA"
)
project_names
<-
c
(
"FIBHULP"
,
"CIPH_unCoVer"
,
"umfiasi"
,
"SMUC"
,
"FiHM"
,
"uncover-up"
,
"IISFJD"
,
"IPC"
,
"unCOVer-UNAV"
,
"TU_Uncover"
,
"BU"
,
"BU"
,
"BU"
,
"BU"
,
"BU"
,
"BU"
,
"BU"
,
"BU"
,
"BU"
,
"BU"
,
"BU"
,
"S_uncover"
,
"S_uncover"
,
"S_uncover"
,
"S_uncover"
,
"TUDublin"
,
"UMF_Cluj"
,
"INS_Data"
,
"INANTRO"
,
"UnCoVer-BiH-Final"
,
"UZA"
)
resource_names
<-
c
(
"Harmonized_variables_2"
,
"CIPH_numeric_derivated"
,
"20220719_HarmonisedUMFIasi"
,
"SMUC_resource"
,
"20220
919_FiHM"
,
"Resource_derived"
,
"IISFJD_Harmonized_1"
,
"IPC_Harmonized"
,
"UNAV_rsc"
,
"TU_Harmonized"
,
"inpatient_ankara"
,
"inpatient_konya"
,
"inpatient_istanbul"
,
"inpatient_izmir"
,
"inpatient_alanya"
,
"inpatient_adana"
,
"outpatient_ankara"
,
"outpatient_konya"
,
"outpatient_istanbul"
,
"outpatient_izmir"
,
"outpatient_alanya"
,
"emergency"
,
"employees"
,
"verona"
,
"isaric"
,
"TUDublin_harmonised"
,
"Romania"
,
"colombia_all"
,
"Inantro"
,
"20220722_HarmonizedUNSA"
,
"UZA_prelim"
)
urls
<-
c
(
"https://192.168.1.200:8001"
,
"https://192.168.1.200:8002"
,
"https://192.168.1.200:8003"
,
"https://192.168.1.200:8006"
,
"https://192.168.1.50:9002"
,
"https://192.168.1.102"
,
"https://uncover.itg.be"
,
"https://uncover.itg.be"
,
"https://192.168.1.50:9001"
,
"https://192.168.1.200:8004"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.101:8443"
,
"https://192.168.1.50:8890"
,
"https://192.168.1.50:8890"
,
"https://192.168.1.50:8890"
,
"https://192.168.1.50:8890"
,
"https://uncover.itg.be"
,
"https://192.168.1.200:8005"
,
"https://fenfisdi.udea.edu.co/opal"
,
"https://192.168.1.200:8007"
,
"https://192.168.1.200:8008"
,
"https://uncover.itg.be"
)
users
<-
c
(
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"emertens"
,
"emertens"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"emertens"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"user_analisis"
,
"emertens"
)
pass
<-
c
(
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"3^z4AV.)hG5~PT/]"
,
"3^z4AV.)hG5~PT/]"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"3^z4AV.)hG5~PT/]"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"Ekfl07UUgz"
,
"3^z4AV.)hG5~PT/]"
)
valid_variables_script.R
View file @
52f4db3d
This diff is collapsed.
Click to expand it.
valid_variables_script_local.R
View file @
52f4db3d
...
...
@@ -120,8 +120,8 @@ check_valid_values_continuous <- function(colname , codebook_param , column){
str_res
<-
"No failing values"
else
{
failing_values
<-
failing_values
[
!
is.na
(
failing_values
)]
#
str_res <- paste( colname , paste(unlist(failing_values) , collapse =" "))
str_res
<-
paste
(
colname
,
collapse
=
" "
)
str_res
<-
paste
(
colname
,
paste
(
unlist
(
failing_values
)
,
collapse
=
" "
))
#
str_res <- paste(colname , collapse =" ")
str_res
<-
paste
(
str_res
,
"should be in range"
,
range_as_str
,
"(continuous)"
,
sep
=
" "
)
}
...
...
@@ -140,8 +140,8 @@ check_valid_values_binary <- function(colname , column){
else
{
range_as_str
<-
"0-1 (binary)"
failing_values
<-
failing_values
[
!
is.na
(
failing_values
)]
#
str_res <- paste(colname , paste(unlist(failing_values) , collapse =" "))
str_res
<-
paste
(
colname
,
collapse
=
" "
)
str_res
<-
paste
(
colname
,
paste
(
unlist
(
failing_values
)
,
collapse
=
" "
))
#
str_res <- paste(colname , collapse =" ")
str_res
<-
paste
(
str_res
,
"should be in range"
,
range_as_str
,
sep
=
" "
)
}
...
...
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