@@ -26,7 +26,7 @@ Code Approach 1 and 2 (2.1 - 2.2) contain the pattern searching algorithms as we
First the file generate_the_excel.py filters the original dataset and provides a file without repetitions of the same proteins with different names.
In case of replicating the similarity matrixes compute_distance_mat.py provides the distance matrixes based on the input wanted. To replicate the experiment if used blosum62, the function generate_nwmodpremade for any other cases is generate_nwmod.
In case of replicating the similarity matrixes, compute_distance_mat.py provides the distance matrixes based on the input wanted. To replicate the experiment, if used blosum62, the function generate_nwmodpremade for any other cases is generate_nwmod.
For the pattern search algorithm one have to introduce the data asked in param_file.conf and execute patterns.py
