File update

code/scrna_ppi_analysis.ipynb

@@ -2551,8 +2551,6 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 386,
-   "outputs": [],
    "source": [
     "cell_data = pd.read_csv('../data/results/network_analysis.csv')\n",
     "module_data = pd.read_csv('../data/results/G_ppi_analysis.csv')\n",
@@ -2563,9 +2561,27 @@
     "collapsed": false,
     "pycharm": {
      "name": "#%%\n"
+    },
+    "ExecuteTime": {
+     "end_time": "2025-05-13T12:21:35.841008Z",
+     "start_time": "2025-05-13T12:21:33.778546Z"
     }
    },
-   "id": "3237a956b8eb2b7c"
+   "id": "3237a956b8eb2b7c",
+   "outputs": [
+    {
+     "ename": "NameError",
+     "evalue": "name 'pd' is not defined",
+     "output_type": "error",
+     "traceback": [
+      "\u001B[1;31m---------------------------------------------------------------------------\u001B[0m",
+      "\u001B[1;31mNameError\u001B[0m                                 Traceback (most recent call last)",
+      "Cell \u001B[1;32mIn[1], line 1\u001B[0m\n\u001B[1;32m----> 1\u001B[0m cell_data \u001B[38;5;241m=\u001B[39m pd\u001B[38;5;241m.\u001B[39mread_csv(\u001B[38;5;124m'\u001B[39m\u001B[38;5;124m../data/results/network_analysis.csv\u001B[39m\u001B[38;5;124m'\u001B[39m)\n\u001B[0;32m      2\u001B[0m module_data \u001B[38;5;241m=\u001B[39m pd\u001B[38;5;241m.\u001B[39mread_csv(\u001B[38;5;124m'\u001B[39m\u001B[38;5;124m../data/results/G_ppi_analysis.csv\u001B[39m\u001B[38;5;124m'\u001B[39m)\n\u001B[0;32m      4\u001B[0m module_data_lcc \u001B[38;5;241m=\u001B[39m module_data[module_data[\u001B[38;5;124m'\u001B[39m\u001B[38;5;124mis_in_LCC\u001B[39m\u001B[38;5;124m'\u001B[39m] \u001B[38;5;241m==\u001B[39m \u001B[38;5;28;01mTrue\u001B[39;00m]\n",
+      "\u001B[1;31mNameError\u001B[0m: name 'pd' is not defined"
+     ]
+    }
+   ],
+   "execution_count": 1
   },
   {
    "cell_type": "code",