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Network medicine for schizophrenia
Commit 25a58253 authored by Maria Marin's avatar Maria Marin
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Update total diseases analysis.ipynb

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analysis/total diseases analysis.ipynb
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......@@ -149,9 +149,9 @@
"results = {\n",
" \"ID\": dis_total,\n",
" \"Seed genes\": [len(dis_gen_dict[dis]) for dis in dis_total],\n",
" \"Genes in PPI\": [len(df_pro_dis_total_filt[df_pro_dis_total_filt[\"dis\"] == dis][\"pro_ppi\"].iloc[0]) for dis in dis_total],\n",
" \"Genes in PPI\": [len(dis_total[dis_total[\"dis\"] == dis][\"pro_ppi\"].iloc[0]) for dis in dis_total],\n",
" \"Genes in LCC\": [len(dis_lcc[dis]) for dis in dis_total],\n",
" \"Relative LCC\": [len(dis_lcc[dis]) / len(df_pro_dis_total_filt[df_pro_dis_total_filt[\"dis\"] == dis][\"pro_ppi\"].iloc[0]) for dis in dis_total],\n",
" \"Relative LCC\": [len(dis_lcc[dis]) / len(dis_total[dis_total[\"dis\"] == dis][\"pro_ppi\"].iloc[0]) for dis in dis_total],\n",
" \"Mean random LCC (ndp)\": [dis_lcc_ndp[dis][0] for dis in dis_total],\n",
" \"Std random LCC (ndp)\": [dis_lcc_ndp[dis][1] for dis in dis_total],\n",
" \"Z-score (ndp)\": [dis_lcc_ndp[dis][2] for dis in dis_total],\n",
......
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